I'm sure it is in the right circumstances. But as Mooch himself states if the batteries are only 10 or so cycles apart and you're not doing Super Sub-Ohm builds (less than .1 Ohms) there's a safety net of the roughly 3.1V cutoff that most regulated mods have. If you have 2 batteries that were bought at the same time and cycled evenly through a single battery mod I see no reason why they couldn't be used in a dual battery mod.
If you watched the video he even states that the differences in batteries when you get them from the manufacturer are often more than the difference from a battery that has about 50 cycles on it. And he says that if you charge the batteries separately you are basically refreshing them back to square one. (Provided of course that they're the same type of battery and have had roughly the same amount of usage.)
Here's another interesting vid with Mooch. Lots of good info here on batteries. The marriage part starts at approx. 35:00.
He states that it's obviously better to marry the batteries but explains the instances when it's not overly crucial. This video was in Oct. 2016 and he was in the middle of doing some testing on battery marriage. I haven't been able to find the results of that testing though. Another thing that I didn't know before is that it's not a good idea to charge mods with batteries in series inside the mod ... via USB. I generally charge mine externally anyways and only in a pinch to I charge them in the mod. Learn something new every day!!